Aneta Koseska

Cellular Cognition



Contact

Phone:+49 (231) 133 - 2252
Fax:+49 (231) 133 - 2299

Koseska A, Bastiaens PI (2017). Cell signaling as a cognitive process. EMBO J
doi: 10.15252/embj.201695383.

2015

Zou W, Senthilkumar DV, Nagao R, Kiss IZ, Tang Y, Koseska A, Duan J, Kurths J (2015). Restoration of rhythmicity in diffusively coupled dynamical networks. Nat Commun 7709.
doi: 10.1038/ncomms8709.


2014





Trpevski I, Stanoev A, Koseska A, Kocarev LJ (2014). Discrete-time distributed consensus algorithm on multiplex networks. New Journal of Physics 16, 113063
10.1088/1367-2630/16/11/113063


2013





Koseska A, Volkov E, Kurths J (2013).Oscillation quenching mechanisms: amplitude vs. oscillation death. Physics Reports 531(4), 173
http://dx.doi.org/10.1016/j.physrep.2013.06.001

Koseska A, Volkov E, Kurths J (2013). Transition from amplitude to oscillation death via Turing bifurcation. Phys Rev Lett 111(2):024103.
doi: 10.1007/s11538-013-9807-8. 

Zou W, Senthilkumar DV, Koseska A, Kurths J (2013). Generalizing the transition from amplitude to oscillation death in coupled oscillators. Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Nov;88(5):050901.
doi: http://dx.doi.org/10.1103/PhysRevLett.111.024103

Zakharova A, Nikoloski Z, Koseska A (2013). Dimensionality reduction of bistable biological systems. Bull Math Biol 75(3):373-92.
doi: 10.1007/s11538-013-9807-8.

Zakharova A, Schneider I, Kyrychko YN, Blyuss KB, Koseska A, Fiedler B, Schöll E (2013). Time delay control of symmetry-breaking primary and secondary oscillation death. Europhys. Lett. 104, 50004
EPL 104 59901

Zou W, Senthilkumar DV, Koseska A, Kurths J (2013). Generalizing the transition from amplitude to oscillation death in coupled oscillators. Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Nov;88(5):050901.
doi: http://dx.doi.org/10.1103/PhysRevLett.111.024103

Winck FV, Arvidsson S, Riaño-Pachón DM, Hempel S, Koseska A, Nikoloski Z, Urbina Gomez DA, Rupprecht J, Mueller-Roeber B (2013). Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation. PLoS One 8(11):e79909.
doi: 10.1371/journal.pone.0079909.

Hempel S, Koseska A, Nikoloski Z (2013). Data-driven reconstruction of directed networks. The European Physical Journal B 86(6): 250:1-250:17
doi: 10.1140/epjb/e2013-31111-8


2012





Ullner E, Ares S, Morelli LG, Oates AS, Julicher F, Nicola E, Heussen R, Whitmore D, Blyuss K, Fryett M, Zakharova A, Koseska A, Nene NR and Zaikin A (2012). Noise and oscillations in biological systems: multidisciplinary approach between experimental biology, theoretical modelling and synthetic biology International Journal of Modern Physics B 26, 1246009
http://dx.doi.org/10.1142/S0217979212460095


2011





Zakharova A, Kurths J, Vadivasova T, Koseska A (2011). Analysing dynamical behavior of cellular networks via stochastic bifurcations. PLoS One 6(5):e19696.
doi: 10.1371/journal.pone.0019696.

Koseska A, Volkov E and Kurths J (2011). Synthetic multicellular oscillatory systems: controlling protein dynamics with genetic circuits. Physica Scripta 84, 045007
Physica Scripta

Hempel S, Koseska A, Kurths J, Nikoloski Z (2011). Inner composition alignment for inferring directed networks from short time series. Phys Rev Lett 107(5):054101.
doi http://dx.doi.org/10.1103/PhysRevLett.107.054101.

Hempel S, Koseska A, Nikoloski Z, Kurths J (2011). Unraveling gene regulatory networks from time-resolved gene expression data - a measures comparison study. BMC Bioinformatics 12:292.
doi: 10.1186/1471-2105-12-292.

Grimbs S, Arnold A, Koseska A, Kurths J, Selbig J, Nikoloski Z (2011). Spatiotemporal dynamics of the Calvin cycle: multistationarity and symmetry breaking instabilities. Biosystems 103(2):212-23.
doi: 10.1016/j.biosystems.2010.10.015.


Before 2011





Koseska A, Kurths J (2010). Topological structures enhance the presence of dynamical regimes in synthetic networks. Chaos 20(4):045111.
doi: 10.1063/1.3515200.

Koseska A, Volkov E, Kurths J (2010). Parameter mismatches and oscillation death in coupled oscillators. Chaos 20(2):023132.
doi: 10.1063/1.3456937.

Koseska A, Ullner E, Volkov E, Kurths J, García-Ojalvo J (2010). Cooperative differentiation through clustering in multicellular populations. J Theor Biol 263(2):189-202.
doi: 10.1016/j.jtbi.2009.11.007.

Zakharova A, Vadivasova T, Anishchenko V, Koseska A, Kurths J (2010). Stochastic bifurcations and coherencelike resonance in a self-sustained bistable noisy oscillator. Phys Rev E Stat Nonlin Soft Matter Phys 81(1 Pt 1):011106.
http://dx.doi.org/10.1103/PhysRevE.81.01110

Koseska A, Volkov E and Kurths J (2009). Detuning-dependent dominance of oscillation death in globally coupled synthetic genetic oscillators. Europhys. Lett. 85, 28002
doi: 10.1209/0295-5075/85/28002

Koseska A, Zaikin A, Kurths J, García-Ojalvo J (2009). Timing cellular decision making under noise via cell-cell communication. PLoS One 2009;4(3):e4872.
doi: 10.1371/journal.pone.0004872. 

Ullner E, Koseska A, Kurths J, Volkov E, Kantz H, García-Ojalvo J (2008). Multistability of synthetic genetic networks with repressive cell-to-cell communication. Phys Rev E Stat Nonlin Soft Matter Phys 78(3 Pt 1):031904.
http://dx.doi.org/10.1103/PhysRevE.78.031904

Koseska A, E. Volkov, Zaikin A and Kurths J (2007).Quantized cycling time in artificial gene networks induced by noise and intercell communication. Phys.Rev.E 76, 020901(R)
https://doi.org/10.1103/PhysRevE.76.020901

- selected for Virtual Journal of Biological Physics Research 14 (5)


br /> Koseska A, Volkov E, Zaikin A, Kurths J (2007). Inherent multistability in arrays of autoinducer coupled genetic oscillators. Phys Rev E Stat Nonlin Soft Matter Phys (3 Pt 1):031916.
http://dx.doi.org/10.1103/PhysRevE.75.031916

Koseska A, Zaikin A, Garcia-Ojalvo J and Kurths J (2007). Stochastic suppression of gene expression oscillators under intercell coupling. Phys.Rev.E 75, 031917
https://doi.org/10.1103/PhysRevE.75.031917

- selected for Virtual Journal of Biological Physics Research 13 (7)




 
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